MvG-NRLMF: Multi-view graph neighborhood regularized logistic matrix factorization for identifying drug–target interactionShow others and affiliations
2024 (English)In: Future Generation Computer Systems, ISSN 0167-739X, E-ISSN 1872-7115, Vol. 160, p. 844-853Article in journal (Refereed) Published
Abstract [en]
Traditional methods for predicting drug–target interactions (DTIs) have significant room for improvement in terms of time period and monetary overhead. At present, machine learning-based approaches are commonly used in the drug discovery field. In this study, a multi-view graph neighborhood regularized logical matrix factorization (MvG-NRLMF) model was proposed to predict unknown DTIs. Multiple similarity matrices (kernels) were constructed from the space of drugs and targets, the corresponding Laplacian matrices were generated, and these were fused. Finally, the MvG-NRLMF model was adjusted using an alternating gradient ascent procedure for training. On the four benchmark datasets, our method was competitive, and on some datasets, our method even outperformed existing models. © 2024 Elsevier B.V.
Place, publisher, year, edition, pages
Amsterdam: Elsevier, 2024. Vol. 160, p. 844-853
Keywords [en]
Bipartite network, Drug–target interactions, Laplacian matrices, Multi-view
National Category
Computer and Information Sciences
Identifiers
URN: urn:nbn:se:hh:diva-54346DOI: 10.1016/j.future.2024.06.046ISI: 001267607800001Scopus ID: 2-s2.0-85197444645OAI: oai:DiVA.org:hh-54346DiVA, id: diva2:1886517
Note
Funding: The work was supported by the Young Research and Innovation Talent Cultivation Program of Harbin University of Commerce, China (2023-KYYWF-0979); the National Natural Science Foundation of China (62172076, U22A2038); Zhejiang Provincial Natural Science Foundation of China (LY23F020003); the Municipal Government of Quzhou, China (2023D038).
2024-08-012024-08-012024-09-04Bibliographically approved