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Drug-drug interaction relation extraction based on deep learning: A review
Taiyuan University Of Technology, Taiyuan, China.
Shenzhen Institutes Of Advanced Technology, Shenzhen, China.
Halmstad University, School of Information Technology.ORCID iD: 0000-0002-2851-4260
University Of Electronic Science And Technology Of China, Chengdu, China.ORCID iD: 0000-0003-2911-7643
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2024 (English)In: ACM Computing Surveys, ISSN 0360-0300, E-ISSN 1557-7341, Vol. 56, no 6, p. 1-33, article id 158Article in journal (Refereed) Published
Abstract [en]

Drug-drug interaction (DDI) is an important part of drug development and pharmacovigilance. At the same time, DDI is an important factor in treatment planning, monitoring effects of medicine and patient safety, and has a significant impact on public health. Therefore, using deep learning technology to extract DDI from scientific literature has become a valuable research direction to researchers. In existing DDI datasets, the number of positive instances is relatively small. This makes it difficult for existing deep learning models to obtain sufficient feature information directly from text data. Therefore, existing deep learning models mainly rely on multiple feature supplementation methods to collect sufficient feature information from different types of data. In this study, the general process of DDI relation extraction based on deep learning is introduced first for comprehensive analysis. Next, we summarize the various feature supplement methods and analyze their merits and demerits. We then review the state-of-the-art literature related to DDI extraction from the deep neural network perspective. Finally, all the feature supplement methods are compared, and some suggestions are given to approach the current problems and future research directions. The purpose of this article is to give researchers a more complete understanding of the feature complementation methods used in DDI extraction to be able to rapidly design and implement custom DDI relation extraction methods. © 2024 Copyright held by the owner/author(s). Publication rights licensed to ACM.

Place, publisher, year, edition, pages
New York, NY: Association for Computing Machinery (ACM), 2024. Vol. 56, no 6, p. 1-33, article id 158
Keywords [en]
Additional Key Words and PhrasesDDI, deep learning, feature supplement, medical text, relation extraction
National Category
Computer and Information Sciences
Identifiers
URN: urn:nbn:se:hh:diva-53123DOI: 10.1145/3645089ISI: 001208566200024Scopus ID: 2-s2.0-85188844494OAI: oai:DiVA.org:hh-53123DiVA, id: diva2:1868601
Note

This work is supported by a grant from the National Natural Science Foundation of China (grant nos. 62322215, 62172296, and 62172076), the Excellent Young Scientists Fund in Hunan Province (grant no. 2022JJ20077) and the Scientific Research Fund of Hunan Provincial Education Department (grant no. 22A0007), the Shenzhen Science and Technology Program (grant no. KQTD20200820113106007), the Zhejiang Provincial Natural Science Foundation of China (grant no. LY23F020003), and the Municipal Government of Quzhou (grant no. 2023D038). In addition, this work was supported in part by the High Performance Computing Center of Central South University and in part by the high performance computing clusters (PL-17161) of Shenzhen Institutes of Advanced Technology.

Available from: 2024-06-12 Created: 2024-06-12 Last updated: 2024-06-12Bibliographically approved

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Tiwari, Prayag

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