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Exploring classical machine learning for identification of pathological lung auscultations
Lithuanian University of Health Sciences, Kaunas, Lithuania.
Kaunas University of Technology, Kaunas, Lithuania.
Kaunas University of Technology, Kaunas, Lithuania.
Kaunas University of Technology, Kaunas, Lithuania.
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2024 (English)In: Computers in Biology and Medicine, ISSN 0010-4825, E-ISSN 1879-0534, Vol. 168, article id 107784Article in journal (Refereed) Published
Abstract [en]

The use of machine learning in biomedical research has surged in recent years thanks to advances in devices and artificial intelligence. Our aim is to expand this body of knowledge by applying machine learning to pulmonary auscultation signals. Despite improvements in digital stethoscopes and attempts to find synergy between them and artificial intelligence, solutions for their use in clinical settings remain scarce. Physicians continue to infer initial diagnoses with less sophisticated means, resulting in low accuracy, leading to suboptimal patient care. To arrive at a correct preliminary diagnosis, the auscultation diagnostics need to be of high accuracy. Due to the large number of auscultations performed, data availability opens up opportunities for more effective sound analysis. In this study, digital 6-channel auscultations of 45 patients were used in various machine learning scenarios, with the aim of distinguishing between normal and abnormal pulmonary sounds. Audio features (such as fundamental frequencies F0-4, loudness, HNR, DFA, as well as descriptive statistics of log energy, RMS and MFCC) were extracted using the Python library Surfboard. Windowing, feature aggregation, and concatenation strategies were used to prepare data for machine learning algorithms in unsupervised (fair-cut forest, outlier forest) and supervised (random forest, regularized logistic regression) settings. The evaluation was carried out using 9-fold stratified cross-validation repeated 30 times. Decision fusion by averaging the outputs for a subject was also tested and found to be helpful. Supervised models showed a consistent advantage over unsupervised ones, with random forest achieving a mean AUC ROC of 0.691 (accuracy 71.11%, Kappa 0.416, F1-score 0.675) in side-based detection and a mean AUC ROC of 0.721 (accuracy 68.89%, Kappa 0.371, F1-score 0.650) in patient-based detection. © Copyright 2024 Elsevier B.V., All rights reserved

Place, publisher, year, edition, pages
Oxford: Elsevier, 2024. Vol. 168, article id 107784
Keywords [en]
Digital health, Auscultation, Lung sounds, Surfboard audio features extractor, Random forest, Isolation forest
National Category
Computer Sciences
Identifiers
URN: urn:nbn:se:hh:diva-53514DOI: 10.1016/j.compbiomed.2023.107784ISI: 001130207800001PubMedID: 38042100Scopus ID: 2-s2.0-85178664642OAI: oai:DiVA.org:hh-53514DiVA, id: diva2:1864061
Note

Funding: This work was funded by a student summer research grant provided by the Research Council of Lithuania (agreement No. P-SV-22-241) and partially funded by the DITA grant from Kaunas University of Technology (grant No. PP2023/39/4) and Lithuanian University of Health Sciences.

Available from: 2024-06-03 Created: 2024-06-03 Last updated: 2024-08-15Bibliographically approved

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Nowaczyk, Sławomir

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