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Kernel Risk Sensitive Loss-based Echo State Networks for Predicting Therapeutic Peptides with Sparse Learning
University Of Electronic Science And Technology Of China, Chengdu, China.
Suzhou University Of Science And Technology, Suzhou, China.
Halmstad University, School of Information Technology.ORCID iD: 0000-0002-2851-4260
University Of Electronic Science And Technology Of China, Chengdu, China.ORCID iD: 0000-0001-6406-1142
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2022 (English)In: Proceedings - 2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022 / [ed] Adjeroh D.; Long Q.; Shi X.; Guo F.; Hu X.; Aluru S.; Narasimhan G.; Wang J.; Kang M.; Mondal A.M.; Liu J., Piscataway: IEEE, 2022, p. 6-11Conference paper, Published paper (Refereed)
Abstract [en]

The detection of therapeutic peptides is usually a biochemical experimental method, which is time-consuming and labor-intensive. Lots of computational biology methods had been proposed to solve the problem of therapeutic peptide prediction. However, the existing methods did not consider the processing of noisy samples. We propose a kernel risk-sensitive mean p-power error-based echo state network with sparse learning (KRP-ESN-SL). An efficient iterative optimization algorithm is used to train the model. The KRP-ESN-SL has better performance than other methods. © 2022 IEEE.

Place, publisher, year, edition, pages
Piscataway: IEEE, 2022. p. 6-11
Keywords [en]
Biological sequence classification, Kernel risk-sensitive loss, Protein function, Sparse learning, Therapeutic peptides
National Category
Biochemistry and Molecular Biology
Identifiers
URN: urn:nbn:se:hh:diva-50030DOI: 10.1109/BIBM55620.2022.9994902Scopus ID: 2-s2.0-85146650638ISBN: 9781665468190 (print)OAI: oai:DiVA.org:hh-50030DiVA, id: diva2:1741517
Conference
2022 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022, Las Vegas, NV, USA, Changsha, China, 6-8 December 2022
Note

Funding Agency: National Natural Science Foundation of China

Available from: 2023-03-06 Created: 2023-03-06 Last updated: 2023-03-06Bibliographically approved

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Tiwari, Prayag

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